Agarwal, A.K., Giacchetti, G., Lavery, G., Nikkila, H., Palermo, M., Ricketts, M., McTernan, C., Bianchi, G., Manunta, P., Strazzullo, P., Mantero, F., White, P.C., Stewart, P.M. (2000) CA-Repeat polymorphism in intron 1 of HSD11B2: effects on gene expression and salt sensitivity, Hypertension, 36, 187-94.

Agarwal, A.K. and White, P.C. (2000) Structure of the VPATPD Gene Encoding Subunit D of the Human Vacuolar Proton ATPase, Biochem Biophys Res Commun, 279, 543-547.

Bangsow, C. et al. (2001) The RUNX3 gene – sequence, structure and regulated expression, Gene, 279, 221-232.

Baudin, B. (2002) New aspects on angiotensin-converting enzyme: from gene to disease, Clin. Chem. Lab. Med., 40, 256-65.

Bedell, J.A., Korf, I., Gish, W. (2000) MaskerAid: a performace enhancement to RepeatMAsker, Bioinformatics, 16(11), 1040-1.

Beutler, E., Gelbart, T., Demina, A. (1998) Racial variability in the UDP-glucuronosyltransferase 1 (UGT1A1) promoter: a balanced polymorphism for regulation of bilirubin metabolism?, Proc. Natl. Acad. Sci., 95, 8170-8174.

Bortoluzzi, S., D'Alessi, F., Romualdi, C., Danieli, G.A., (2000) Differential expression of genes coding for ribosomal proteins in different human tissues, Bioinformatics, 17, 1152-1157.

Brem, R. B., Yvert, G., Clinton, R., Kruglyak, L. (2002) Genetic dissection of transcriptional regulation in budding yeast, Science, 296, 752-755.

Bustin, S.A., (2000) Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays, Journal of Molecular Endocrinology 25, 169–193.

Charmley, P. Concannon, P., Hood, L., Rowen, L. (1995) Frequency and polymorphism of simple sequence repeats in a contiguous 685-kb DNA sequence containing the human T-cell receptor beta-chain gene complex, Genomics, 29, 760-765.

Cheung, V.G., Conlin, L.K., Weber, T.M., Arcaro, M., Jen, K.Y., Morley, M., Spielman, R.S. (2003). Natural variation in human gene expression assessed in lymphoblastoid cells, Nature Genet., 33(3), 422-425.

Coulson, R.M. and Ouzounis, C.A. (2003) The phylogenetic diversity of eukaryotic transcription. Nucleic Acids Res., 31(2), 653-660.

Dahlquist, K.D., Salomonis, N., Vranizan, K., Lawlor, S.C., Conklin, B.R. (2002) GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways, Nat Genet., 31, 19-20.

Dib, C., Faure, S., Fizames, C., Samson, D., Drouot, N., Vignal, A., Millasseau, P., Marc, S., Hazan, J., Seboun, E., Lathrop, M., Gyapay, G., Morissette, J., Weissenbach, J. (1996) A comprehensive genetic map of the human genome based on 5,264 microsatellites, Nature, 380, 152-4.

Enard, W., et al., (2002) Intra- and Inter-specific variation in primate gene expression patterns, Science, 296, 340-343.

Gebhardt, F., Zanker, K.S., Brandt, B. (1999) Modulation of epidermal growth factor receptor gene transcription by a polymorphic dinucleotide repeat in intron 1, J. Biol. Chem., 274, 13176-13180.

Grover, D., Mukerji, M., Bhatnagar, P, Kannan. K., Brahmachari, S.K. (2003) Alu repeat analysis in the complete human genome: trends and variations with respect to genomic composition, Bioinformatics (in press).

Grover, D., Majumder, P.P., Rao, C.B., Brahmachari, S.K., Mukerji, M. (2003) Non-Random Distribution of Alu Elements in Genes of Various Functional Categories: Insight from Analysis of Human Chromosomes 21 and 22, Mol. Biol. Evol., Jun 27 [Epub ahead of print].

Hamada, H., Seidman, M., Howard, B.H., Gorman, C.M. (1984) Enhanced gene expression by the poly(dT-dG)? poly(dC-dA) sequence, Mol. Cell. Biol., 4, 2622-2630.

Hamilton, B.A., (2002) Variations in abundance: genome-wide responses to genetic variation and vice versa, Genome Biol., 3, 1029.1-1029.3.

Hsiao, L.L., Dangond, F., Yoshida, T., Hong, R., Jensen, R.V., Misra, J., Dillon, W., et al., (2001) A compendium of gene expression in normal human tissues, Physiol. Genomics, 7, 97-104.

International sequencing and analysis of the human genome. (2001) Nature, 409, 860-921.

Jin, W., Riley, R. M., Wolfinger, R. D., White, K. P., Passador-Gurgel, G., Gibson, G. (2001) The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster, Nature Genet, 29, 389-395.

Kanehisa, M., Goto, S., Kawashima, S., Nakaya, A. (2002) The KEGG databases at GenomeNet, Nucleic Acids Res., 30, 42-6.

King, Mary-Claire. and Wilson, A.C. (1975) Evolution at two levels in humans and chimpanzees, Science, 188 (4184), 107-116.

Kumaramanickavel, G., Sripriya, S., Ramprasad, V.L., Upadyay, N.K., Paul, P.G., Sharma, T. (2003) Z-2 aldose reductase allele and diabetic retinopathy in India, Ophthalmic Genet., 24(1), 41-8.

Laule, M., Meisel, C., Prauka, I., Cascorbi, I., Malzahn, U., Felix, S.B., Baumann, G., Roots, I., Stangl, K., Stangl, V.(2003) Interaction of CA repeat polymorphism of the endothelial nitric oxide synthase and hyperhomocysteinemia in acute coronary syndromes: evidence of gender-specific differences, J Mol Med., 81(5), 305-9.

Lercher MJ, Urrutia AO, Hurst LD. (2002) Clustering of housekeeping genes provides a unified model of gene order in the human genome. Nature genet., 31:180-183.

Levanon, D. et al. (2003) Phylogenesis and regulated expression of the RUNT domain transcription factors RUNX1 and RUNX3, Blood cells, molecules and diseases, 30, 161-163.

Liu, G., Loraine, A.E., Shigeta, R., Cline, M., Cheng, J., Valmeekam, V., Sun, S., Kulp, D., Siani-Rose, M,A. (2003) NetAffx: Affymetrix probesets and annotations, Nucleic Acids Res., 31(1), 82-6.

Meera G., Ramesh, N., Brahmachari, S.K. (1989). Zintrons in rat ? -lactalbuman gene, FEBS Lett., 251, 245-249.

Nagarkatti, R., Rao, C. B., Rishi, J. P., Chetiwal, R., Shandilya, V., Vijayan, V., Kumar, R., Pemde, H.K., Sharma, S.K., Sharma, S., Singh, A. B., Gangal, S. V., Ghosh, B. (2002) Association of IFNG gene polymorphism with asthma in the Indian population, J Allergy Clin Immunol, 110(3), 410-2.

Naylor, L.H., Clark, E.M. (1990) d(TG)n.d(CA)n sequences upstream of the rat prolactin gene form Z-DNA and inhibit gene transcription, Nucleic Acids Res., 18, 1595-1601.

Niu, T., Chen, X., Xu, X. (2002) Angiotensin converting enzyme gene insertion/deletion polymorphism and cardiovascular disease: therapeutic implications, Drugs, 62, 977-93.

Oleksiak, M.F., Churchill, G.A., Crawford, D.L. (2002) Variation in gene expression within and among natural populations, Nature Genet., 32, 261-6.

Pravica, V., Asderakis, A., Perrey, C., Hajeer, A., Sinnott, P.J., Hutchinson, I.V. (1999) In vitro production of IFN-gamma correlates with CA repeat polymorphism in the human IFN-gamma gene, Eur. J. Immunogenet., 26, 1-3.

Rockman, M. V., Wray, G. A. (2002) Abundant raw material for Cis- regulatory evolution in humans. Mol. Biol. Evol. 19, 1991-2004.

Safran, M., Chalifa-Caspi, V., Shmueli, O., Olender, T., Lapidot, M., Rosen, N., Shmoish, M., Peter, Y., Glusman, G., Feldmesser, E., Adato, A., Peter, I., Khen, M., Atarot, T., Groner, Y., and Lancet, D. (2003) Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE. Nucleic Acids Res. 31(1) 142-146.

Sharma, A., Sharma, V.K., Horn-Saban, S., Lancet, D., Ramachandran,S., Brahmachari, S.K., Assessing natural variations in gene expression in humans by comparing with monozygotic twins(submitted)

Sharma, V.K., Rao, C.B., Sharma, A., Brahmachari, S.K., Ramachandran, S. (2003) (TG/CA)n repeats in human housekeeping genes. J. Biomol. Str. Dyn. 21 (2), 303-10.

Shimajiri, S., Arima, N., Tanimoto, A., Murata, Y., Hamada, T., Wang, K.Y., Sasaguri, Y. (1999) Shortened microsatellite d(CA)21 sequence down-regulates promoter activity of matrix metalloproteinase 9 gene. FEBS Lett 455, 70-4.

Streelman, J.T. , Kocher, T.D. (2002) Microsatellite variation associated with prolactin expression and growth of salt-challenged tilapia. Physiol Genomics. 9, 1-4.

Su, A.I., Cooke, M.P., Ching, K.A., Hakak, Y., Walker, J.R., Wiltshire, T., Orth, A.P., Vega, R.G., Sapinoso, L.M., Moqrich, A., Patapoutian, A., Hampton, G.M., Schultz, P.G., Hogenesch, J.B. (2002) Large-scale analysis of the human and mouse transcriptomes. Proc Natl Acad Sci 99(7), 4465-70.

Tae, H.J., Luo, X., Kim, K.H. (1994) Roles of CCAAT/enhancer-binding protein and its binding site on repressiosn and derepression of acetyl-CoA carboxylase gene. J. Biol. Chem, 269(14), 10475-10484.

Weissenbach, J., Gyapay, G., Dib, C., Vignal, A., Morissette, J., Millasseau, P., Vaysseix, G., Lathrop, M. (1992) A second-generation linkage map of the human genome. Nature, 359, 794-801.

Wheeler, D. L., Church, D.M., Federhen, S., Lash, A.E., Madden, T.L., Pontius, J.U., Schuler, J.D., Schriml, L.M., Sequeira, E., Tatusova, T.A., Wagner, L. (2003) Database resources of the National Center for Biotechnology, Nucleic Acids Res., 31(1), 28-33.

Yu, H., Li, B.D., Smith, M., Shi, R., Berkel, H.J., Kato, I. (2001). Polymorphic CA repeats in the IGF-I gene and breast cancer. Breast Cancer Res Treat. 70(2),117-22.